1. Main
2. Proteins
3. Documents
4. Database
5. Links
The main page allows for naviagtion throughout the website. The main page consists of protein information, reviewing documents about the project, or links to related sites. At the top of the interface is a navigation banner that allows for easy access throughout the entire site.
On the main page are links for specific information about proteins. User can select to do see the protein list, do a sequence search, or database search.
2.1 Protein List
From the main menu select the protein list option. In the protein list select the protein that you wish to query (1MCP is the only option). In the drop down menu, select the search type to perform, or select the "1MCP in PDB Format" to view the full PDB format for 1MCP. If selected "molecules" then select the molecule from the list you want to display.
2.2 Sequence Search
From the main menu select the sequence search option. The user is prompted to enter an amino acid chain. The chain be from 1 letter to a whole sequence. After input is enter, select the search button to begin search. If a match is made between a protein's amino acid sequence and the amino acid chain entered then the protein is displayed with pdb id, name, and full sequence. If no match is made then no protein data is displayed.
2.3 Database Search
Under Construction.
From the main menu is a list of documents that pertain to this project. documents include user guide, requirements document, proposal report, DTD, PDB parser source code, PDB parser output, URI PDB part 1 and 2, and the full 1MCP in XML. Click on any of the links to open and view or download the appropiate file.
From the main menu is a list of documents that pertain to the database from 1MCP. User can view 1MCP database data, URI protein databank, or URI protein XMLSpy which will prompt the user to download or open. Also the URI protein schema can be viewed by clicking the link.
On the main menu under links are two links for the University of Rhode Island main webiste and the University of Rhode Island Computer Science Department, these links will open in new windows.